@jonathan-souders
Forum Replies Created
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It was a Meditech extract from it’s DR database and I think, if I remember correctly, we ultimately ended up splitting up the extract into multiple files and doing the following:
<code>
set RESULTID [lindex $s 7]
set systemTime [clock seconds]
set dateTime [clock format $systemTime -format %Y%m%d%H%M%S]### retrieve MRN from flat file
set pathfile “/opt/cloverleaf/cis6.2/integrator/_xcon_note01/data/Meditech/gbResultID.TXT”
set fileID [open $pathfile]
set prevRESULTID [read $fileID]
close $fileIDif {$RESULTID != $prevRESULTID && $pt != “” && [string range $MRN 0 2] == “HSM”} {
# normal logic here
} else {
### OBX logic
set obx “”
#echo “entering OBX logic…”
set MRN [lindex $s 0]
set OriginiationTimestamp [lindex $s 9]; set yyyymm [string range $OriginiationTimestamp 0 5]
#set OBSERVATIONVALUE [lindex $s 15]
set OBSERVATIONVALUE [lindex $s 36]
set OBSERVATIONVALUE [string map {$EndofSegment “~”} $OBSERVATIONVALUE]#set SEQNUM [lindex $s 16]
set SEQNUM “1”
#set OBX3VALUE [lindex $s 15];
set OBX3VALUE “”
set obx “OBX|$SEQNUM|TX|$OBX3VALUE||$OBSERVATIONVALUE”
if {$OBSERVATIONVALUE != “” && $OBSERVATIONVALUE != “ReportText” } {
#echo $obx
set fn_suffix “HOS_FR_SHMT_”;
append fn_suffix $yyyymm;
append fn_suffix “_HL7_”;
append fn_suffix $MRN;
append fn_suffix “.txt”
#set pathfile2 “/opt/cloverleaf/cis6.2/integrator/_xcon_note01/data/SHMT_HOSP/$fn_suffix”
#set pathfile2 “/opt/cloverleaf/cis6.2/integrator/_xcon_note01/data/2020/conv_MeditechNotesSampleHL7.txt”
#set pathfile2 “/home/hci/Conversions/epicextract07/Summit Conversion/_xcon_trans01/data_in/TRANS_DLTA_SHMT/Final/HL7_$fn_delta”set pathfile2 “/home/hci/Conversions/epicextract07/Summit Conversion/_xcon_trans01/data_in/TRANS_DLTA_SHMT/Final/HL7_$fn_delta.txt”
set HL7file [open $pathfile2 a+]
puts -nonewline $HL7file $obx; puts -nonewline $HL7file $EndofSegment
close $HL7file}
</code>
Awesome! There are some template outlines in $HCIROOT/scripts/templates that give you some general starting places on the different types of functions you might use. The one for TPS includes some function parameters, one of which is ‘userArgs’ which you can then call print(userArgs), or however you plan to use them, within your function. Below is my general understanding of ways to use (most of) the parameters:
def __MODULE_NAME__(cloverEnv, context, mode, msg, userArgs, dl):if mode == ‘run’:# Obtain thread namehciConnName = cloverEnv.getThreadName()# Print user argumentsuargs = userArgs# Obtain content of message handledata = msg.getContent())# Commit any changes you’ve made to your message contentmsg.setContent(str(data))# Add message to disposition listdl.add(CONTINUE, msg)Clever!
I never followed up on this since there didn’t seem to be any interest, but I eventually did find a way to install libraries from pip.
It required downloading an updated version of the Jython Standalone .jar file that is in $HCIROOT/lib/java – the version that already exists in that directory wouldn’t allow the ensurepip command to work for whatever reason, but installing the libraries in the updated version is backwards compatible for the older version – and running the following commands:
$ java -jar jython-standalone-2.7.1.jar -m ensurepip
$ java -jar jython-standalone-2.7.1.jar -m pip install –upgrade pip
$ java -jar jython-standalone-2.7.1.jar -m pip install hl7
$ java -jar jython-standalone-2.7.1.jar -m pip install zxJDBCAfter doing this, I could write my scripts with any libraries I had installed from pip and set the threads to run with the Script TPS module.
