I asked the same question back in April. Here was the response I received from Quovadx Support:
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Solution: We do not qualify the software for each service pack or maintenance level, especially the regular weekly/monthly ones put out by Microsoft. There are just too many of these. We qualify at the base OS and if service packs cause a conflict we deal with that as it is found.
Having said that I am not aware of any issues regarding the service pack 1 or 2 for windows 2003.
Thanks, Rick
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